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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcttttatgcatttgttgtcattatgtgtttgacttcagtgatttggtgtgttatgttgttaattaactatggtttcttattgcagAGAGAGATTACTACCAATTGCTGACATAATTACCCCAAATGTGAAAGAGGCTTCTGCTTTACTTGATGGTTTTCGGATTGAGACTGTTGCAGAAATGCGG

Basic information

species Arabidopsis thaliana
transcript AT1G22940.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22940.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv12s0035g00320.t01 (Vitis vinifera), 3'ss of exon 4
----gtaaagcttttatgcatttgtt-gtcattatgtg----tttga---cttcagtgatttggtgtgttatgttgttaattaactatggtttcttattgcagAGAGAGATTACTACCAATTGCTGACATAATTACCCCAAATGTGAAAGAGGCTTCTGCTTTACTTGATGGTTTTCGGATTGAGACTGTTGCAGAAATGCGG
    || |    | | ||||  | |  || || || ||    |||||   ||| |    | | ||||   ||||  |||  |    ||||||||| | | |||||||  | | || || || ||||||||  | ||||||||| |||||||||| ||||||||||||| |||| | |   | ||||||||| | || ||| | 
gtatgtcagttctatgtgcacatttaagtaataatttgatgatttgagtcctttaaccttctagtgtcccatgtaattatattttaatggtttctgactacagAGAGGAACTTCTTCCCATGGCTGACATTGTAACCCCAAATTTGAAAGAGGCATCTGCTTTACTTGGTGGTCTACAACTGGAGACTGTTTCTGATATGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttcagtgatttggtgtgttatgttgttaattaactatggtttcttattgcagAGAGAGATTACTACCAATTGCTGACATAATTACCCCAAATGTGAAAGAGGCTTCTGCTTTACTTGATGGTTTTCGGATTGAGACTGTTGCAGAAATGCGG
                              aattaac  putative branch site (score: 2)
                                          tttcttatt  putative PPT
                    ttatgttgttaattaa  TA-rich tract