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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctcaatccttaaaattcctagacataacttaaccatttccttcaatgatttacaaacacatttctttcgcagCGAGCAGTACTAAACAAAGACAACAACTTTGAACTCTACAAGCAAGCAGCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAA

Basic information

species Arabidopsis thaliana
transcript AT1G22880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22880.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G48140.1 (Glycine max), 3'ss of exon 3
------------------gtatgtctcaatccttaaaattccta-gacataacttaacc-----------atttccttcaatga-tttacaaacacatttctttcgcagCGAGCAGTACTAAACAAAGACAACAACTTTGAACTCTACAAGCAAGCAGCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAA
                    ||||  ||    | |||| |  || ||   || ||               || |   ||| ||  ||||       ||| ||    ||| ||||| | || ||    || || || ||||| |  |||||||||| |||||||||||| ||||| ||||||||||| || ||||| || ||    ||| 
gtatatctatcatattgttcatgtgccagcattgaaaaatattaagagtcaagttgtttgcatgatgttaatctgactcagtgggtttatttgtttattgctactacagAGAGCATTGCTGAATGGTGATAAGAATTTTGATCAATACAAGCAAGAAGCTGAGAATTTTATGTGCAAGATCCTTCCCAACTCTCCCTCTTCAAGTACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagacataacttaaccatttccttcaatgatttacaaacacatttctttcgcagCGAGCAGTACTAAACAAAGACAACAACTTTGAACTCTACAAGCAAGCAGCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAA
         acttaac  putative branch site (score: 3)
                                         catttctttc  putative PPT
      ataacttaa  TA-rich tract