1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagtgtgcttgtgttgtttacttatgtagctgtattagttacctgttgatttgcgatgctgcttctgactctagttttaattctggttaggaatgatttgcttagtttgtctctgaatcatgatttagaaagataatcagattggttgctttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAA
species | Arabidopsis thaliana |
transcript | AT1G21720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039666|gb|DR335421.1|DR335421
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039651|gb|DR335406.1|DR335406
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039663|gb|DR335418.1|DR335418
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039667|gb|DR335422.1|DR335422
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86076686|gb|DR372443.1|DR372443
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039659|gb|DR335414.1|DR335414
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039656|gb|DR335411.1|DR335411
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGAEST: gi|86039662|gb|DR335417.1|DR335417
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
EST: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATTCTTTACGAGAAGAG ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTG-CTTGGGAGATGATGA
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGgtcagtgtgc ... tttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGA
gtttgtctctgaatcatgatttagaaagataatcagattggttgctttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAA
ctttatttc CT-rich tract
atttagaaagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgtgcttgtgttgtttacttatgtagctgtattagttacctgttgatttgcgatgctgcttctgactctagttttaattctggttaggaatgatttgcttagtttgtctctgaatcatgatttagaaagataatcagattggttgctttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA