1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgtttacctttttactcatacaatgctttggttggattctctttattgtattgatcttctttgggggattggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATTGTTGACCGAGATATTTTACCTGATATGGTCAAAATAGTGAAGAAGAAG
species | Arabidopsis thaliana |
transcript | AT1G21380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGATTCTTGCTCTTTAT GCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGEST: gi|86072584|gb|DR368341.1|DR368341
genomic: GTCCAGATTCTTGCTCTTTATgtgagtgttt ... attggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAG
EST: AGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTAT GCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATT
genomic: AGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTATgtgagtgttt ... attggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATT
atgctttggttggattctctttattgtattgatcttctttgggggattggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATTGTTGACCGAGATATTTTACCTGATATGGTCAAAATAGTGAAGAAGAAG
tattgat putative branch site (score: 3)
tttattgtattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtttacctttttactcatacaatgctttggttggattctctttattgtattgatcttctttgggggattggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATTGTTGACCGAGATATTTTACCTGATATGGTCAAAATAGTGAAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG