1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttagtattctttgtgaattattctcactattgaactgattatagatggttcctttattctgtgtgttaatacttgtgttgactttttgtgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT
species | Arabidopsis thaliana |
transcript | AT1G20693.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGACCCCTAACAAACCAAAGAGGCCAGCCGGTGCTTTCTTCGTTTTCAT GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCEST: gi|164068876|gb|ES124453.1|ES124453
genomic: AGGACCCC-AACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATgtaatcctcg ... tgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCC
EST: AAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCAT GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCEST: gi|164158781|gb|ES187958.1|ES187958
genomic: AAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATgtaatcctcg ... tgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTC
EST: CTTCGTTTTCAT GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTEST: gi|164067173|gb|ES061782.1|ES061782
genomic: CTTCGTTTTCATgtaatcctcg ... tgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGT
EST: AAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCAT GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTEST: gi|116400368|gb|EG442960.1|EG442960
genomic: AAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATgtaatcctcg ... tgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGT
EST: AAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCAT GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTEST: gi|163975361|gb|ES019807.1|ES019807
genomic: AAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATgtaatcctcg ... tgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGT
EST: CTTTC-TCGTTTTCAT GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGT
genomic: CTTTCTTCGTTTTCATgtaatcctcg ... tgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGT
gatggttcctttattctgtgtgttaatacttgtgttgactttttgtgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT
tgttgac putative branch site (score: 3)
ctttttgt CT-rich tract
ttaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagtattctttgtgaattattctcactattgaactgattatagatggttcctttattctgtgtgttaatacttgtgttgactttttgtgatgtgtagGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - ctcacta