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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcggtgatttgcttgaaagtgtttctgttttggaaaattgttgagttgttgcttaggttttcacctttgcttctattgcttagtatcttatacaaatggatgttataacctgcaaaatctgtttccagatactaaaagtctttgcgtttcttctctgttttggcagGGCGCTGAATCAGATTCAAGCTCTTTTCACATCCGTTTGACATACACTAAAGCATCAGACGAGGCTCAGGGTGCTTCTGAAACAACGCATGAAAGTAAGA

Basic information

species Arabidopsis thaliana
transcript AT1G20410.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19879115|gb|AU239946.1|AU239946
EST:     TAAAGGATGCCTTGAA-GTTCTACTCTTGGATCAACTTAAAGCATCGTTG                         GGCGCTGAATCAGATTCAAGCTCTT
genomic: TAAAGGATGCCTTGAAAGTTCTACTCTTGGATCAACTTAAAGCATCGTTGgtgagtcggt ... gttttggcagGGCGCTGAATCAGATTCAAGCTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaaatctgtttccagatactaaaagtctttgcgtttcttctctgttttggcagGGCGCTGAATCAGATTCAAGCTCTTTTCACATCCGTTTGACATACACTAAAGCATCAGACGAGGCTCAGGGTGCTTCTGAAACAACGCATGAAAGTAAGA
                  tactaaa  putative branch site (score: 1)
                           tctttgcgtttcttct  putative PPT
                 atactaaaa  TA-rich tract