1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtgatatcaaaactcattcttttgtttatgtgtgttgagatttccaatttgccttgtgttttgaatctcctttctttgttttttgtttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATA
species | Arabidopsis thaliana |
transcript | AT1G19660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGTCTTCTTCTCCCCATTATCGTCT TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAGEST: gi|116471465|gb|EG514057.1|EG514057
genomic: ACTGGTCTTCTTCTCCCCATTATCGTCTgtatgtgata ... tttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAG
EST: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCT TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAEST: gi|86052189|gb|DR347946.1|DR347946
genomic: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCTgtatgtgata ... tttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATA
EST: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCT TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGAEST: gi|124966619|gb|EL040711.1|EL040711
genomic: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCTgtatgtgata ... tttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGA
EST: AACTGGTCTTCTTNTCCCCATTATCGTCT TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAEST: gi|86052186|gb|DR347943.1|DR347943
genomic: AACTGGTCTTCTTCTCCCCATTATCGTCTgtatgtgata ... tttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATA
EST: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCT TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGAEST: gi|86052208|gb|DR347965.1|DR347965
genomic: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCTgtatgtgata ... tttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGA
EST: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCT TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGA
genomic: TGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCTgtatgtgata ... tttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGA
tttccaatttgccttgtgttttgaatctcctttctttgttttttgtttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATA
tctcctttctttgttt CT-rich tract
tttctttgttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgatatcaaaactcattcttttgtttatgtgtgttgagatttccaatttgccttgtgttttgaatctcctttctttgttttttgtttattgcagTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG