Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatgttgatttttaaaaaaactagattgtggaaccgttctcttgtgcggtttcctttaggcttactgaatcttctaaatgtatttccagGGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G19650.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088306|gb|DR384065.1|DR384065
EST:     CTAAGAGACACATTGACTCCAGTACAACAATCCTAGATGTCCAAGGCCTG                         GGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCAGTTGCAA
genomic: CTAAGAGACACATTGACTCCAGTACAACAATCCTAGATGTCCAAGGCCTGgtatacatgt ... gtatttccagGGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCAGTTGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttctcttgtgcggtttcctttaggcttactgaatcttctaaatgtatttccagGGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAG
                                     ttctaaa  putative branch site (score: 2)
                                              tatttcc  putative PPT
                                     ttctaaatgtattt  TA-rich tract