1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtataatagttttgtttcttgattctaaaacatgttctcatctgtgacaatttgtcatgtaacatcttctttcttgttgtatcttatttactgtgtttttctttccttttgacagTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGCAAAA
species | Arabidopsis thaliana |
transcript | AT1G19450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGAATACGTTGGACGGAAAGGG TCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCAEST: gi|125229620|gb|EL243705.1|EL243705
genomic: TTGCTGAATACGTTGGACGGAAAGGGgtataatagt ... cttttgacagTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCA
EST: TTGGAGCAATTGCGAGTGGTCAGATTGCTGAATACGTTGGACGGAAAGGG TCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTC
genomic: TTGGAGCAATTGCGAGTGGTCAGATTGCTGAATACGTTGGACGGAAAGGGgtataatagt ... cttttgacagTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTC
aacatcttctttcttgttgtatcttatttactgtgtttttctttccttttgacagTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGCAAAA
atgtaac putative branch site (score: 3)
tcttatttactgtgtt putative PPT
ttgtatcttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatagttttgtttcttgattctaaaacatgttctcatctgtgacaatttgtcatgtaacatcttctttcttgttgtatcttatttactgtgtttttctttccttttgacagTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC