Sequence
atgc intronic sequence ATGC exonic sequencegtatgttcatttaccgcttatatctgttttccggttattctgtactcatttaaaacgttttgaaccatcttgtttatttccgtaaacagATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGATGATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G19170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G19170.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os02g54030.1 (Oryza sativa), 3'ss of exon 1
----------------------------------------------------gtatgttcatttaccgcttatatctgttttccggttattctgtactcatttaaaacgttttgaaccatcttgtttatttccgtaaacagATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGATGATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGG
| | || | |||| || | ||||| | | |||||| ||| | || ||| | ||| ||||||| || ||||| || | |||||| | || |||||| || |||||||| || ||| |||||||||| |||||||| | |||||||||||||||
gtaatcatacgaacctttcttcagtaatttccaatcatcctgcataatttcagcttcttgttataccatctaggtttgtttctgttatcaatgacagtcattttttttatttggtgatg-ctgacatatagctgtatgcagATTCTTGTCAGGATGTGCTTATTGAGAATTGCTACATTTCAGTTGGTGATGATGCCATAGCGGTAAAGAGTGGGTGGGATCAATATGGGATTGCATATGG
upper sequence: AT1G19170.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G348602_T01 (Zea mays), 3'ss of exon 3
gtatgttcatttaccgcttatatctgttttccggttattctgtactcatt-taaaacgttttgaaccatcttgtttatttccgtaaacagATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGATGATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGG
| | | || || || || ||| || ||| ||| ||| ||||||| || ||||| || | |||||| | || ||||| || |||||||| || || ||||||||||| |||||||||| ||| |||||||| ||
-----------------------gtaatgttgaattgttgaccacaaatcataatgtagattcctatttctcacatataagtgtatgcagATTCTTGTCAGGATGTGCTTATTGAGAATTGCTACATATCGGTTGGCGATGATGCAATAGCTATAAAGAGTGGTTGGGATCAGTATGGTATTGCATACGG
upper sequence: AT1G19170.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G047414_T01 (Zea mays), 3'ss of exon 3
----------gtatgttcatttaccgcttatatctgttttccggttattctgtactcatt-taaaacgttttgaaccatcttgtttatttccgtaaacagATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGATGATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGG
|| | || ||| | | | | || || || || ||| || ||| ||| ||| ||||||| || ||||| || | |||||| | || ||||| || |||||||| || || ||||||||||| |||||||||| ||| |||||||| ||
tcctgtctatactaactcttgcactagttacaggtaatgttgaattgttgaccacaaatcataatgtagattcctatttctcacatataagtgtatgcagATTCTTGTCAGGATGTGCTTATTGAGAATTGCTACATATCGGTTGGCGATGATGCAATAGCTATAAAGAGTGGTTGGGATCAGTATGGTATTGCATACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattctgtactcatttaaaacgttttgaaccatcttgtttatttccgtaaacagATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGATGATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGG
tcttgtttatttcc CT-rich tract
atttaaaacgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttcatttaccgcttatatctgttttccggttattctgtactcatttaaaacgttttgaaccatcttgtttatttccgtaaacagATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGATGATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA