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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttcttgtgttacaattttcttgattctgtatgaaggtttttctttttgcactttctcccatttcatctgattgtggactgttctatcttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G18470.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86039339|gb|DR335094.1|DR335094
EST:     ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATG                         CTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
genomic: ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGgtaaatatcc ... ttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
EST: gi|86039336|gb|DR335091.1|DR335091
EST:     ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATG                         CTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
genomic: ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGgtaaatatcc ... ttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
EST: gi|116478068|gb|EG520660.1|EG520660
EST:     ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATG                         CTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
genomic: ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGgtaaatatcc ... ttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
EST: gi|86039337|gb|DR335092.1|DR335092
EST:     ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATG                         CTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
genomic: ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGgtaaatatcc ... ttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
EST: gi|152035998|gb|AU237167.2|AU237167
EST:     ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATG                         CTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG
genomic: ACTTGTAGCATTTGAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGgtaaatatcc ... ttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcactttctcccatttcatctgattgtggactgttctatcttaaatgcagCTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG
                      atctgat  putative branch site (score: 4)
                                      ttctatctt  putative PPT
                                         tatcttaaat  TA-rich tract