1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgagctcatcggaaacaaactttggtttatttagttaaccaatctctttaacttttatcacttgttattttgattctttctgtttatgattgctggaattctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
species | Arabidopsis thaliana |
transcript | AT1G18440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGT---T-- G--G-ACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTGEST: gi|47829868|gb|CK119552.1|CK119552
genomic: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCTgtaagtgagc ... ttctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
EST: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCT GTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTGEST: gi|19879108|gb|AU239939.1|AU239939
genomic: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCTgtaagtgagc ... ttctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
EST: CGATTATGCTGGCTAAACCACAAACTTTCATGGACCTAAGTGGTGAGTCT GTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTGEST: gi|47828134|gb|CK117818.1|CK117818
genomic: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCTgtaagtgagc ... ttctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
EST: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCT GTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTGEST: gi|47831407|gb|CK121091.1|CK121091
genomic: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCTgtaagtgagc ... ttctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
EST: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCT GTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
genomic: CGATTATGCTGGCTAAACCACAAACTTTCATGAACCTAAGTGGTGAGTCTgtaagtgagc ... ttctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
tttatcacttgttattttgattctttctgtttatgattgctggaattctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
ttttgat putative branch site (score: 4)
ttcttt putative PPT
ttattttgattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgagctcatcggaaacaaactttggtttatttagttaaccaatctctttaacttttatcacttgttattttgattctttctgtttatgattgctggaattctttgaagGTTGGACAAATCGTTTCATTTTACAAGATCCCGTTAAAGCAAGTACTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG