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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttcaaaatctcatgagaaaaacacttgcaatctcatcttctcaactttatcgagtgtgtttgctttggtctacgcagCAACTTCTTGAGCTTGGTGATAGAATTGGTTATGTGAATACTGGACTAAAAGAAAGCGAGATACATCGTTGTCTTGGGAAAATCAAACCATCCGTATCAC

Basic information

species Arabidopsis thaliana
transcript AT1G17970.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17970.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G34270.1 (Glycine max), 3'ss of exon 3
----------------------gtatgtttttcaaaatctcatgagaaaaacacttgcaatctcatcttctca-actttatcgagtgtgtttg---ctttggtctacgc-----agCAACTTCTTGAGCTTGGTGATAGAATTGGTTATGTGAATACTGGACTAAAAGAAAGCGAGATACATCGTTGTCTTGGGAAAATCAAACCATCCGTATCAC-
                       | | | |||     |   ||   | |  | | ||| || |  ||    || | | | |    |||||       | |||| |  |      ||||| | || ||||||||||| ||||||||| ||||||| |||||||| || |||   |||||    ||     |  |||| |  |     ||  | |    
gtgattttttcctcaagtaaagatgtctattttcttgtacaatattatatccccatgctatgttgtccgtgcacattgttttatatgtgtcaaaacttctggtttgtgtttgatagCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTCAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGAT-TCAATTTTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgcaatctcatcttctcaactttatcgagtgtgtttgctttggtctacgcagCAACTTCTTGAGCTTGGTGATAGAATTGGTTATGTGAATACTGGACTAAAAGAAAGCGAGATACATCGTTGTCTTGGGAAAATCAAACCATCCGTATCAC
                    aactttat  TA-rich tract