1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgttatgttacacttttataacattctagtagtaatcttcaggatgtttaatcttttatgttgaaacttttgcttttggtattggctatgattgacacatttatctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT
species | Arabidopsis thaliana |
transcript | AT1G17370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|116486725|gb|EG529317.1|EG529317
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|124748243|gb|EH838373.1|EH838373
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|116486728|gb|EG529320.1|EG529320
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|124866650|gb|EH951087.1|EH951087
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: CTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|116386137|gb|EG428729.1|EG428729
genomic: CTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|116486731|gb|EG529323.1|EG529323
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|124784788|gb|EH874495.1|EH874495
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAEST: gi|116386087|gb|EG428679.1|EG428679
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
EST: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAG TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
genomic: TTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGgtgtgttatg ... tctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCA
tgttgaaacttttgcttttggtattggctatgattgacacatttatctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT
tttatct CT-rich tract
aaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttatgttacacttttataacattctagtagtaatcttcaggatgtttaatcttttatgttgaaacttttgcttttggtattggctatgattgacacatttatctgatgcagTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG