Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattagtgacataaatctggttttctaacccgtaattcagattagttttgtctcacttttttccgatgcctgcagctgcagctgcctctctttgtgtccaagtaaagGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCTCCTTAAATTTAGTATCTAAAACTGATACTCTTTTCAAGTCCTCTTATCAATAAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G17160.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17160.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g47550.1 (Oryza sativa), 3'ss of exon 3
----------------gtaataattagtgacataaatctggttttctaacccgtaattcagattagttttgtctca--cttt--tttccgatgcctg----cagctgcagctgcctctctttgtgtccaagtaaagGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCTCCTTAAATTTAGTATCTAAAACTGATACTCTTTTCAAGTCCTCTTATCAATAAAAG
                 |  |  | | |    |  |  || |||  |   |   ||           ||||  | |  |||   ||||| ||   |     ||||||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| ||  || | || ||  ||| |    |  |      |||                             
gtactgaaagcaccctctcctcgtcatttgattgcaattgatttcttgttcttcaacattagcatactttgcttgaggcttcaatttccaatttttaatttcagCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGTAATGGACCTTCTGGAATCTG---TTCAGGTTGAATA-----------------------------

upper sequence: AT1G17160.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G178346_T02 (Zea mays), 3'ss of exon 1
gtaataattagtgacataaatctggttttctaacccg-taattcagattagttttgtctcacttttttccg-atgcctg-----cagctgcagctgcctctctttgtgtccaagtaaagGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCTCCTTAAATTTAGTATCTAAAACTGATACTCTTTTCAAGTCCTCTTATCAATAAAAG
    ||   |   || |     |   | | | |||   |  ||    |   | |||  |   |   |||    | ||||     ||||||| || |||||||| ||||| | ||||||||| || ||||| |||||||||||| ||||||| ||  ||||||| ||  ||| |    |   |  |  |||                             
---gtacgaaaccacgtcctcttcaatatttgaccgactggtttccttgcatcttgatttgatagcttctacgttcctgaatcccagCTGCTGCCGCCTCTCTGTGTGTTCGAGTAAAGGGGGCTATACCCAGCATGCCTGACAGAAAATCGGTGATGAAGCTTCTGGAATCTG---TGGGAGTCGAATA-----------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacttttttccgatgcctgcagctgcagctgcctctctttgtgtccaagtaaagGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCTCCTTAAATTTAGTATCTAAAACTGATACTCTTTTCAAGTCCTCTTATCAATAAAAG
 gtctcac  putative branch site (score: 3)
                                cctctctttgtgtcc  putative PPT
                                               aagtaaa  TA-rich tract