1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagtctgagcttcttatgctttcatcttgtgcttttgctgattcagtatcccttgattgtgtctactatatctatacctgtgttttgatttgtttaatagGTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCA
species | Arabidopsis thaliana |
transcript | AT1G16040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCG GTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAAEST: gi|164140841|gb|ES121203.1|ES121203
genomic: TACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCGgttagtattt ... tgtttaatagGTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAA
EST: GAGCNGTTGGCCGAAGCTTAGTCGGACTAATTGCCG GTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAA
genomic: GAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCGgttagtattt ... tgtttaatagGTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAA
gtatcccttgattgtgtctactatatctatacctgtgttttgatttgtttaatagGTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCA
ttttgat putative branch site (score: 4)
tttgttt CT-rich tract
ttttgatttgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtctgagcttcttatgctttcatcttgtgcttttgctgattcagtatcccttgattgtgtctactatatctatacctgtgttttgatttgtttaatagGTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg