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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactgtttttgtttatgagaacctaaatgctttagaagatgtgtatctttatcattgtttcgatttgtattgttgcagGAGATAACTTCAATGCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTCAAAAACTTTTGACAGATATAGTTCTTGTATTATCGTATAATTTTACTGT

Basic information

species Arabidopsis thaliana
transcript AT1G15140.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125285627|gb|EL299712.1|EL299712
EST:     CCACGGGAGCGGTGCTGTGCGGACAGAAACAAATGGCTGAG                         GAGATAACTTCAATGCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTC
genomic: CCACGGGAGCGGTGCTGTGCGGACAGAAACAAATGGCTGAGgtatgcactg ... attgttgcagGAGATAACTTCAATGCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatgctttagaagatgtgtatctttatcattgtttcgatttgtattgttgcagGAGATAACTTCAATGCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTCAAAAACTTTTGACAGATATAGTTCTTGTATTATCGTATAATTTTACTGT
 acctaaa  putative branch site (score: 3)
                    tatctttat  TA-rich tract