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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattctttgccataacaaagacaaatctacgtgaatagagttggtagtgttaatgatgtttttttattcatctactgaagGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATCAGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCATGTA

Basic information

species Arabidopsis thaliana
transcript AT1G14380.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877105|gb|AU237936.1|AU237936
EST:     AGCTTGAACAAGCTGCAATTAAGGTTCAAGTTNCCTTCAGAGCTCATCAG                         GCACGTAGAGCATTTCGAACTCTTAAAGGTATCATCAGGCTGCAGGCAGTT
genomic: AGCTTGAACAAGCTGCAATTAAGGTTCAAGCTACCTTCAGAGCTCATCAGgtacttattc ... tctactgaagGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATCAGGCTGCAGGCAGTT
EST: gi|164133879|gb|ES011689.1|ES011689
EST:     AGCTTGAACAAGCTGCAATTAAGGTTCAAGCTACCTTCAGAGCTCATCAG                         GCACGTAGAGCATTTCGAACTCTTAAAGGTATCA
genomic: AGCTTGAACAAGCTGCAATTAAGGTTCAAGCTACCTTCAGAGCTCATCAGgtacttattc ... tctactgaagGCACGTAGAGCATTTCGAACTCTTAAAGGTATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacgtgaatagagttggtagtgttaatgatgtttttttattcatctactgaagGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATCAGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCATGTA
                      tgttaat  putative branch site (score: 3)
 tttttttattcatct  putative PPT
 ttaatgatgttttttt  TA-rich tract