1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcgtttatcataagttaaatttgtgtaatatatagtggggattatcttttggtagtctaatggtgacgtagctaatcgtgtaaaactttatgcctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTGCTG
species | Arabidopsis thaliana |
transcript | AT1G14300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAG ATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCAEST: gi|86074196|gb|DR369953.1|DR369953
genomic: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAGgtcgtttatc ... cctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCA
EST: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAG ATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCAEST: gi|47828406|gb|CK118090.1|CK118090
genomic: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAGgtcgtttatc ... cctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCA
EST: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAG ATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCAEST: gi|19877399|gb|AU238230.1|AU238230
genomic: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAGgtcgtttatc ... cctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCA
EST: TTCTAGTGAATCTTGCTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAG ATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCA
genomic: TTCTAGTGAATCTTACTCAGTTGGATGATGGGGTTTCTTCTTTGCTTCAGgtcgtttatc ... cctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCA
tttggtagtctaatggtgacgtagctaatcgtgtaaaactttatgcctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTGCTG
agctaat putative branch site (score: 3)
cctttgtt putative PPT
taaaactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgtttatcataagttaaatttgtgtaatatatagtggggattatcttttggtagtctaatggtgacgtagctaatcgtgtaaaactttatgcctttgttagATTGACGATGAGAAGATGCATGGACTACATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC