1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaaaacaacacttctcatatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATC
species | Arabidopsis thaliana |
transcript | AT1G12900.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGG--- G-AACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|116442534|gb|EG485126.1|EG485126
genomic: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGTAAgttaaaacaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGG--- G-AACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|116408015|gb|EG450607.1|EG450607
genomic: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGTAAgttaaaacaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCT-GGGG--- GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|116473085|gb|EG515677.1|EG515677
genomic: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGTAAgttaaaacaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCCCCCCTGGGGG--- G-AACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|116408023|gb|EG450615.1|EG450615
genomic: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGTAAgttaaaacaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCT-GGGG--- GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|116473086|gb|EG515678.1|EG515678
genomic: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGTAAgttaaaacaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCCCCCCT-GGGG--- GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
genomic: TCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGTAAgttaaaacaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
atatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATC
atctaaa putative branch site (score: 3)
atttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaaacaacacttctcatatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG