Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatagttgttaagatgctatgctgatcactgattagtaaaactagcagtcaaagaatagttatttgagagaatgattagtatacaagtaacaacatgttttgtgtttctaatcagCAATGTCAAGAAGACCATGACGTGTTACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTGATTGCGAAGCAGAAGGA

Basic information

species Arabidopsis thaliana
transcript AT1G12860.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19798815|gb|AU230105.1|AU230105
EST:     C-GTGATTAGCTGTTTCAATGGTTTTGCTTT-GATGTTTTCCGCGCTGAG                         CAATGTCAAGAATACCATGACGTGTTACCTGAACAAATCAAAGCAGTGCTT
genomic: CGGTGATTAGCTGTTTCAATGGTTTTGCTTTGGATGTTTTCCGCGCTGAGgtaatatagt ... ttctaatcagCAATGTCAAGAAGACCATGACGTGTTACCTGAACAAATCAAAGCAGTGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgagagaatgattagtatacaagtaacaacatgttttgtgtttctaatcagCAATGTCAAGAAGACCATGACGTGTTACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTGATTGCGAAGCAGAAGGA
                        aagtaac  putative branch site (score: 2)
                                          tgtttct  putative PPT
              attagtata  TA-rich tract