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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgatttatcggtcacttctaatatattctatccctacacaaaaaggtacggtgctttactatgtctttatatgattgattcttcagGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTATTACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTCATAGGC

Basic information

species Arabidopsis thaliana
transcript AT1G11790.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11790.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G00650.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------gttttgatttat-cggtcacttcta-atatattctatccctacacaaaaaggtacggtgctttactatgtctttatatgattgattctt-----cagGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTATTACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTCATAGGC
                                                            |   |  |    |  | || ||||||   || |||  || ||||  | | |||    |  || | ||||||  |||  ||  |     |||||||| ||    ||||| ||||||||||| ||  |||| ||||| ||||| || ||||| || |||||||||||||||||||| |||||| | || |   
gttgcattgcttgtttcttaattaacatctctctctttctcccccccccccaccccccccacacacacacatatatatatatatatatgatgccttgactaaaatattctgtg----atgatatatttataatattcttttctgcaagCAGGCTGTCGAATCGTGGTTAGTGGATAAAGCTGTTCTACCAATCGAAAATTCTGTTGGTGGAAGCATCCACCGTAATTATGATTTACTTCTTGGACACA---

upper sequence: AT1G11790.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv10s0116g01670.t01 (Vitis vinifera), 3'ss of exon 3
gttttgatttatcggtcacttctaatatattctatccctacacaaaaaggtacggtgcttta--ctatgtctttatatgattg--attcttcagGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTATTACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTCATAGGC
     | |    |    |||  || |||  | |||   ||   ||  |  |       ||||  || |   || |    |||   ||| | ||||| |||||  | ||||||||||| ||||||||  | || || |||||||| |||||||| || ||||| |||||||||||| | || ||| | || ||||
-----gttcagccaaatactaata-tatgctttatggttattgaattaatttacacattttaaactcttaattaactaaatttccattttgcagGCAGTTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctacacaaaaaggtacggtgctttactatgtctttatatgattgattcttcagGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTATTACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTCATAGGC
                                         gattgat  putative branch site (score: 4)
                                               ttcttc  CT-rich tract
                                  tttatatgattgatt  TA-rich tract