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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgcattgcttcttctttttttcatgtttattcaactgttttttagcttcacttctttatcctgagcttatatatgttatggagttggttacagtgtctgaggttttcgttacgttgcagGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G09840.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09840.6 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 3'ss of exon 1
-------------------------------------------------gtaagtcttgcattgcttcttcttttttt-catgtttattcaactgttttttagcttcacttctttatcctgagct-tatatatgttatggagttggttaca-gtgtctgaggttttcgttacgt------tgcagGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAG
                                                 ||   ||| |   |   | |    | ||  |    ||    | |  ||  ||   || |     ||   | || |  |  |    || || | || |  | |  |    |   || |   ||  |      |||||||||| ||||| |||||||||||||| |  ||||||||  | |||||||| || ||||| ||  |  ||||||||||||||||||| |  |||
gtaagctgctgcatctgaaatttctgtatgtttgttggttgaacttcttgtggttctggagctatatatgggctcttggcccaattggcaagcatttggttgaatttataagcttggacagaaccatggaagctttctgaatttcggcaaacataatggtaattcttcctatataacccttgcagGATAGCGAACCTGATATTATTGATGGTGTGGGTGCTGAAGCAGGTCATGTAATAAGAACAACTTTTGGTGGTCGAAATGGTCAATCTAAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttatatatgttatggagttggttacagtgtctgaggttttcgttacgttgcagGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAG
                                      ttttcgtt  CT-rich tract
     tatatgttat  TA-rich tract