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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgaaaactttgtgaatcttttggaccatttctcttgttagttctaatttcagtgaataactcactaaacagGTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAG

Basic information

species Arabidopsis thaliana
transcript AT1G09130.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164095887|gb|ES055531.1|ES055531
EST:     TTTACATTTACATCAACTCCACAGGGACCACTCGTGATGATGGAGAGACG                         GTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTC
genomic: TTTACATTTACATCAACTCCACAGGGACCACTCGTGATGATGGAGAGACGgtaagtttga ... cactaaacagGTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTC
EST: gi|86066846|gb|DR362603.1|DR362603
EST:     TTTACATTTACATCAACTCCACAGGGACCACTCGTGATGATGGAGAGACG                         GTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTT
genomic: TTTACATTTACATCAACTCCACAGGGACCACTCGTGATGATGGAGAGACGgtaagtttga ... cactaaacagGTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttggaccatttctcttgttagttctaatttcagtgaataactcactaaacagGTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAG
                                         aactcac  putative branch site (score: 2)
                        ttctaattt  TA-rich tract