1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctcatatgactaatgacttcttgcaccctgaattatatgctctgcatgcatattatattgcatcataactcatttgcttattcaatatatgcctcacagGGGAGATGTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTA
species | Arabidopsis thaliana |
transcript | AT1G08510.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATGGGTTGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTG GGGAGATGTTGTTGEST: gi|86073234|gb|DR368991.1|DR368991
genomic: ATATGGGTTGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTGgtaagctatc ... tgcctcacagGGGAGATGTTGTTG
EST: ATATGGGTTGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTG GGGAGATGTTGTTGAAGTAGACACCTGGGTCAGTCAATCTGGAAAGAATGG
genomic: ATATGGGTTGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTGgtaagctatc ... tgcctcacagGGGAGATGTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGG
catgcatattatattgcatcataactcatttgcttattcaatatatgcctcacagGGGAGATGTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTA
tcataac putative branch site (score: 2)
ttattcaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcatatgactaatgacttcttgcaccctgaattatatgctctgcatgcatattatattgcatcataactcatttgcttattcaatatatgcctcacagGGGAGATGTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - -atgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcataa