1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agatattcgttcgtgtcacgtggttcttattactacttttgtctctgtgttttgttattatttcactactcaccaatgatgctcgtcttgtttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTG
species | Arabidopsis thaliana |
transcript | AT1G08200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTEST: gi|116471821|gb|EG514413.1|EG514413
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
EST: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTEST: gi|116456222|gb|EG498814.1|EG498814
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
EST: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTEST: gi|124892908|gb|EH971810.1|EH971810
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
EST: ATGG-AAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTEST: gi|125048099|gb|EL120368.1|EL120368
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
EST: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTAEST: gi|124723788|gb|EH815190.1|EH815190
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTA
EST: ATGG-AAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCEST: gi|116456221|gb|EG498813.1|EG498813
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCC
EST: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTEST: gi|124987660|gb|EL060103.1|EL060103
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
EST: ATGG-AAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTEST: gi|116456217|gb|EG498809.1|EG498809
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGT
EST: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTEST: gi|124927650|gb|EL005370.1|EL005370
genomic: ATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
EST: CTCTGCGTCAG GATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
genomic: CTCTGCGTCAGgtcagtattt ... tttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGT
tgtgttttgttattatttcactactcaccaatgatgctcgtcttgtttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTG
tactcac putative branch site (score: 1)
tcttgttt putative PPT
tttgttattatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatattcgttcgtgtcacgtggttcttattactacttttgtctctgtgttttgttattatttcactactcaccaatgatgctcgtcttgtttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - gtctctg
- - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaat