1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatggtgaacattcatacattcgaaaaaaacgatttcagtaaatatttgttatctgaattgatgttttatttgtgtattgtagGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTAGTGATCTCTTTAGAAGGAAGAATGTG
species | Arabidopsis thaliana |
transcript | AT1G07630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAACACCTTGTGCAAGAGCTTTTGTTTAGAGCTGCTAAGAAAGCTG GTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTEST: gi|164010782|gb|ES075444.1|ES075444
genomic: AGCTCAACACCTTGTGCAAGAGCTTTTGTTTAGAGCTGCTAAGAAAGCTGgtatggtgaa ... tgtattgtagGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGT
EST: CTTTTGTTTAGAGCTGCTAAGAAAGCTG GTATGGATTTCCATGAATTGCTAGAGATACCGCAAGGTGAACGAAGACGGT
genomic: CTTTTGTTTAGAGCTGCTAAGAAAGCTGgtatggtgaa ... tgtattgtagGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGT
aacgatttcagtaaatatttgttatctgaattgatgttttatttgtgtattgtagGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTAGTGATCTCTTTAGAAGGAAGAATGTG
aattgat putative branch site (score: 4)
taaatatttgttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgaacattcatacattcgaaaaaaacgatttcagtaaatatttgttatctgaattgatgttttatttgtgtattgtagGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTAGTGATCTCTTTAGAAGGAAGAATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA