Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccattaatttcttattattatttttcaaagtttctcttctcatctatacttctgtaaaagagaattgattcaaaatgttttttgcagAGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTCACCTGCGTACGCTGCACCACACTTTT

Basic information

species Arabidopsis thaliana
transcript AT1G06460.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125270893|gb|EL284978.1|EL284978
EST:     TGAGACAGGCTTCGACTAATGAG                         AGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
genomic: TGAGACAGGCTTCGACTAATGAGgtaccattaa ... ttttttgcagAGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
EST: gi|125123188|gb|EL169637.1|EL169637
EST:     ACAGGCTTCGACTAATGAG                         AGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
genomic: ACAGGCTTCGACTAATGAGgtaccattaa ... ttttttgcagAGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
EST: gi|47831960|gb|CK121644.1|CK121644
EST:     AAGCATCTTCTGCACAAGGNNNNNNNATGAGACAGGCTTCGACTAATGAG                         AGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
genomic: AAGCATCTTCTGCACAAGGTTTTTTTATGAGACAGGCTTCGACTAATGAGgtaccattaa ... ttttttgcagAGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
EST: gi|47830420|gb|CK120104.1|CK120104
EST:     AGCATCTTCTGCACAAGGNNNNNNNNATGAGACAGGCTTCGACTAATGAG                         AGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA
genomic: AGCATCTTCTGCACAAGG-TTTTTTTATGAGACAGGCTTCGACTAATGAGgtaccattaa ... ttttttgcagAGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttctcatctatacttctgtaaaagagaattgattcaaaatgttttttgcagAGGACCATACCACATGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTCACCTGCGTACGCTGCACCACACTTTT
                              aattgat  putative branch site (score: 4)
                                           tgtttttt  putative PPT
                              aattgattcaaaatgt  TA-rich tract