1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgctatatttgctttcttgttttgctttgatttgtgattggttcctggttacattgtcttgatattgttttgttctttgtattgatttgcgtttagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATACCTCACACTCACCTTGCAAAAGAGAAGTCTGATCAGAACTGGATGGTTG
species | Arabidopsis thaliana |
transcript | AT1G04430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGATACAAG GTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATAEST: gi|125186430|gb|EL201384.1|EL201384
genomic: CTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGATACAAGgtgctatatt ... ttgcgtttagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATA
EST: CTCCACCATCTGGATACAAG GTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATAEST: gi|116486106|gb|EG528698.1|EG528698
genomic: CTCCACCATCTGGATACAAGgtgctatatt ... ttgcgtttagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATA
EST: CTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGATACAAG GTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATAEST: gi|124909506|gb|EH983586.1|EH983586
genomic: CTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGATACAAGgtgctatatt ... ttgcgtttagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATA
EST: CTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGATACAAG GTTCCTATTAAGTGG
genomic: CTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGATACAAGgtgctatatt ... ttgcgtttagGTTCCTATTAAGTGG
ttcctggttacattgtcttgatattgttttgttctttgtattgatttgcgtttagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATACCTCACACTCACCTTGCAAAAGAGAAGTCTGATCAGAACTGGATGGTTG
tattgat putative branch site (score: 3)
atattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctatatttgctttcttgttttgctttgatttgtgattggttcctggttacattgtcttgatattgttttgttctttgtattgatttgcgtttagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATACCTCACACTCACCTTGCAAAAGAGAAGTCTGATCAGAACTGGATGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT