1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tcgctgtcatctttcggtatattttttctaacttttactgtcagctacttgattaatttgctctagattgttaatgttttccttgctgccctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTCCTCTGTGTTATGGCTATTGGAAAAAGTTTGCCGATCATGAGGCTCGGG
species | Arabidopsis thaliana |
transcript | AT1G04080.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAG GACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTEST: gi|164107112|gb|ES007216.1|ES007216
genomic: AGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAGgtatgtgtgg ... ctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTT
EST: GAGACGGAGAGGATAGCGCAG GACAATATAGC-AAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTEST: gi|163967211|gb|ES021750.1|ES021750
genomic: GAGACGGAGAGGATAGCGCAGgtatgtgtgg ... ctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTT
EST: GAGACGGAGAGGATAGCGCAG GACAATATAGC-AAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTEST: gi|116437310|gb|EG479902.1|EG479902
genomic: GAGACGGAGAGGATAGCGCAGgtatgtgtgg ... ctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTT
EST: AGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAG GACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTEST: gi|116437309|gb|EG479901.1|EG479901
genomic: AGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAGgtatgtgtgg ... ctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTT
EST: AGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAG GACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTT
genomic: AGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAGgtatgtgtgg ... ctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTT
tacttgattaatttgctctagattgttaatgttttccttgctgccctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTCCTCTGTGTTATGGCTATTGGAAAAAGTTTGCCGATCATGAGGCTCGGG
ttttccttgctgccct CT-rich tract
attgttaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgctgtcatctttcggtatattttttctaacttttactgtcagctacttgattaatttgctctagattgttaatgttttccttgctgccctgattacagGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTCCTCTGTGTTATGGCTATTGGAAAAAGTTTGCCGATCATGAGGCTCGGG
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