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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttcagtagacttaggtagagcaagaaagaacttagtctccattttctttcttaaaggagttgctgtgtttctgatatttttcttgggtgttgcacagGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGCGAGAACTACAGCGAAAGGGTTCTTCCTT

Basic information

species Arabidopsis thaliana
transcript AT1G03860.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032647|gb|DR328400.1|DR328400
EST:     CACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATG                         GTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
genomic: CACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATGgtgcgttttg ... tgttgcacagGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
EST: gi|86032654|gb|DR328407.1|DR328407
EST:     CACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATG                         GTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
genomic: CACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATGgtgcgttttg ... tgttgcacagGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
EST: gi|86032653|gb|DR328406.1|DR328406
EST:     CACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATG                         GTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
genomic: CACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATGgtgcgttttg ... tgttgcacagGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
EST: gi|164219774|gb|ES070956.1|ES070956
EST:     GTAGAGAGCACCACTGGTAGTCATGATCTTCAGATG                         GTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT
genomic: GTAGAGAGCACCACTGGTAGTCATGATCTTCAGATGgtgcgttttg ... tgttgcacagGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttcttaaaggagttgctgtgtttctgatatttttcttgggtgttgcacagGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGCGAGAACTACAGCGAAAGGGTTCTTCCTT
                          ttctgat  putative branch site (score: 3)
                         tttctgatattttt  TA-rich tract