Sequence
atgc intronic sequence ATGC exonic sequencegtacgcaaaatgcttctgagtgatgaagtctaagcaccaaaagagttctttttttctttctttccagagtttggtcgcattttttaatttttgataccaatcaatttgatagatgttcttgactgttcgtgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCT
Basic information
| species | Arabidopsis thaliana |
| transcript | AT1G03457.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G03457.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os05g30980.1 (Oryza sativa), 3'ss of exon 3
gtacgcaaaatgcttctgagtgatgaagtctaagcaccaaaagagttctttttttctttctttccagagtttggtcgcattttttaatttttgataccaatcaatttgatagatgttcttgactgttcgtgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCT
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-----------------gtatgaggctctctaa------aattatttcttccataattcatttgtatatcctcagaataattgttaaattttg---ctaatgtatctatgttttcatgttgac-gctgttgct-tccagAGCACAAACTTTTCATTGGAATGCTTCCAAAAAATGTAACAGATGCTGAAATGACTGATTTATTTTCGCAATATGGGAACATCAAGGATTTGCAAATTTT
upper sequence: AT1G03457.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G39300.1 (Glycine max), 3'ss of exon 3
gtacgcaaaatgcttctgagt-gatgaagtctaagcaccaaaagagttctttttttctttctttccagagtttggtcgcattttttaatttttgataccaatcaatttgatagatgttcttgactgttcgtgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCT
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gtataaaatgtttttattatttaatgaaaaattattttcagctga-taaatttcttagcatatgccagaattgctttgtgctatat------tgaggtcatgc--cttgataagtagttttctgtggtccttgaatccagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTT
upper sequence: AT1G03457.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------gtacgcaaaatgcttctgagtgatgaa-gtctaagcaccaaaaga-gttctttttttctttct--ttccagagtttggtcgcattttttaatttttgataccaatcaatttgatagatg-ttcttgactgttcgtgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCT
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gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgccagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877225|gb|AU238056.1|AU238056EST: ATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAG AGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAG
genomic: ATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAGgtacgcaaaa ... tgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttttgataccaatcaatttgatagatgttcttgactgttcgtgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCT
tcttgac putative branch site (score: 3)
aatcaattt TA-rich tract
