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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgtgttcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaattttttttttgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT

Basic information

species Arabidopsis thaliana
transcript AT1G03190.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G09080.1 (Glycine max), 3'ss of exon 3
gtaagtatgtgttcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaattttttttt-tgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT
        || |  |||| |    | | || | | | ||     |  |   ||  || |   |  |    |||      |||   |||| |||  | ||    ||||   ||||||||||| || ||  ||||| ||||||| |||||||||||||| || || |||||| | ||||||||||||||| | ||||||||
--------gtatgtaggatgagagttt-tgttcttaatgtcttaattcttaaatgttacctctggtcatcactaactaaaacttcttttctttacgtagCTACTGATGCCTGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 3
gtaagtatgtgttcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaattttttttttgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT
||| ||| |   ||||    ||  |   ||  || |||   |    |   |   | |  | ||   |  ||||  |   |    |||| |||    ||    ||||   ||||||||||| || ||  ||||| ||||||| |||||||||||||| || || |||||| | ||||||||||||||| | ||||||||
gtatgtaggatgtcagttttgttgttaatgtcttaattcttaa---atgttgcctctggtcatc--actaactaaa---atttcttttctttacatagCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtatg-tgt-tcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaat--tttttttttgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT
||||||    ||  | |    | || |   | | |  | |  ||  |||   |     | |  | |||||  |||  |       ||  || ||||| ||||     ||    |||||||| || |||||  ||||| |||||||||| ||||||||||| || || |||||| | || || ||||||||  ||  ||||||
gtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgactaaagttggacatgcttctttttcgcagTTTCAGACACCTGGCTTGCGAATCCTGCTTTGCCTGATGATATTCTGAAGGAGGCTGTGCCAGGAAATATTCGGCGAGCAGAGCATTTCTTGTCTGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacagtaaattttctaattctatgaacttgacgcaacaattttttttttgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT
                                         ttttttttttgc  CT-rich tract
       taaattttctaattct  TA-rich tract