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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatctttttctctagagcttcagctactgttttcatgtcgcgaagagagcttgaaagagattttaaaagtagggagaaaactagagttgtcaatgagagaaaagttttgtgattggcatatagaaactgcggtattcacatctgtttcttttgctttccttttgcagACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G03040.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164162517|gb|ES136693.1|ES136693
EST:     GGAACTTGTACCTACCGTTAACAAG                         ACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTC
genomic: GGAACTTGTACCTACCGTTAACAAGgttggtatct ... ccttttgcagACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTC
EST: gi|116436446|gb|EG479038.1|EG479038
EST:     TAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGTTAACAAG                         ACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTC
genomic: TAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGTTAACAAGgttggtatct ... ccttttgcagACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTC
EST: gi|116436445|gb|EG479037.1|EG479037
EST:     TAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGTTAACAAG                         ACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTC
genomic: TAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGTTAACAAGgttggtatct ... ccttttgcagACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcatatagaaactgcggtattcacatctgtttcttttgctttccttttgcagACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAG
                      ttcacatctgtttctt  CT-rich tract
     atatagaaa  TA-rich tract