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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttgcctttcttatatctaagtgtagcttggtgctttgattcatatgctgatggcttttgctgtttgctttgcttgtataactatagTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAGAACACTAGGGTCATTATTGATAGTGGTGCTGTCCCTTTATTCGTCAAACTTC

Basic information

species Arabidopsis thaliana
transcript AT1G02690.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125101847|gb|EL156835.1|EL156835
EST:     ATGACTTCACTCAACTTCAG                         TTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAGAAC
genomic: ATGACTTCACTCAACTTCAGgtgagcttgc ... ataactatagTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgattcatatgctgatggcttttgctgtttgctttgcttgtataactatagTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAGAACACTAGGGTCATTATTGATAGTGGTGCTGTCCCTTTATTCGTCAAACTTC
                                           gtataac  putative branch site (score: 3)
                                            tataactata  TA-rich tract