Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctgattacctccaccattccttacatatatcctatcaatgcttatcactgttcctgaaaacttgtgtttttgtgaatctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G02305.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038008|gb|DR333763.1|DR333763
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037983|gb|DR333738.1|DR333738
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037996|gb|DR333751.1|DR333751
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038014|gb|DR333769.1|DR333769
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037985|gb|DR333740.1|DR333740
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|125077983|gb|EL140544.1|EL140544
EST:     CAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037980|gb|DR333735.1|DR333735
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038020|gb|DR333775.1|DR333775
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038002|gb|DR333757.1|DR333757
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037992|gb|DR333747.1|DR333747
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038004|gb|DR333759.1|DR333759
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|116429058|gb|EG471650.1|EG471650
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038015|gb|DR333770.1|DR333770
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037994|gb|DR333749.1|DR333749
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037990|gb|DR333745.1|DR333745
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038001|gb|DR333756.1|DR333756
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038019|gb|DR333774.1|DR333774
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037989|gb|DR333744.1|DR333744
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037997|gb|DR333752.1|DR333752
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037987|gb|DR333742.1|DR333742
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037986|gb|DR333741.1|DR333741
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037984|gb|DR333739.1|DR333739
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037998|gb|DR333753.1|DR333753
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|124891627|gb|EH970529.1|EH970529
EST:     TTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: TTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038000|gb|DR333755.1|DR333755
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038013|gb|DR333768.1|DR333768
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038011|gb|DR333766.1|DR333766
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|124748800|gb|EH838930.1|EH838930
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCG
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCG
EST: gi|86037991|gb|DR333746.1|DR333746
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038017|gb|DR333772.1|DR333772
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038021|gb|DR333776.1|DR333776
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86037988|gb|DR333743.1|DR333743
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|86038010|gb|DR333765.1|DR333765
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAA
EST: gi|164109948|gb|EL974539.1|EL974539
EST:     CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACT                         GTTGCAGAGTTTAAGCGCCTTCTTG
genomic: CAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTgtgagtttct ... ctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaatgcttatcactgttcctgaaaacttgtgtttttgtgaatctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAA
                        aaaactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttctgattacctccaccattccttacatatatcctatcaatgcttatcactgttcctgaaaacttgtgtttttgtgaatctatgtgtagGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC