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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttttttaatctcttagcacacatttacgtaagcttaagggtattcatctgtctagaaatgatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGATGATGACATCCTTGAGCTAAAAGGGACTAACTTGTATCACGCAACCGAG

Basic information

species Arabidopsis thaliana
transcript AT1G01920.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069205|gb|DR364962.1|DR364962
EST:     ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCC                         GTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
genomic: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttt ... gatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
EST: gi|86069207|gb|DR364964.1|DR364964
EST:     ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCC                         GTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
genomic: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttt ... gatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
EST: gi|19874501|gb|AU235332.1|AU235332
EST:     ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCC                         GTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
genomic: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttt ... gatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcacacatttacgtaagcttaagggtattcatctgtctagaaatgatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGATGATGACATCCTTGAGCTAAAAGGGACTAACTTGTATCACGCAACCGAG
                                         aaatgatat  TA-rich tract