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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttttttttgccgtatgttaggtataggtttcatatgtttattattccaaaaataaaattatcaaaagtggattttatagagaaaatgtctgaaacagGGCATATCAACGGACAGGATCATAGATGTTCGGCGGCTGTTATCGGTTAACTTCGACACCTGCCACGTCACCAATTATTCGCTCTCCCATGAG

Basic information

species Arabidopsis thaliana
transcript AT1G01320.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G06160.1 (Glycine max), 3'ss of exon 1
-gatttttttttgccgtatgttaggtataggtttcatatgtttattattccaaaaataaaattatcaaaagtggat------tttatagagaaaatgtctgaaacagGGCATATCAACGGACAGGATCATAGATGTTCGGCGGCTGTTATCGGTTAACTTCGACACCTGCCACGTCACCAATTATTCGCTCTCCCATGAG
   || ||| || || | |   || | ||| | |||    |||||||||       |  | | |   ||| ||| |      ||||||    |||| | |||| ||||| |||||||||||||| || ||||||||||| ||||| |||||||| ||    || || ||  |  |||| |||| ||| || || ||||||
tatttatttatttccatttccaagttctagctctcacgattttattattgttt---tttattcacataaaatggtttatttatttatattttaaat-tttgaagCAGGGAATATCAACGGACAGAATTATAGATGTTCGTCGGCTTTTATCGGTGAATACGGAGACGTGTTATATCACAAATTTTTCCCTGTCGCATGAG

upper sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 3
gatttttttttgccgtatgttaggtataggtttcatatgtttattattccaaaaataaaattatcaaaa-gtggattttatagagaaaatgtctg---aaacagGGCATATCAACGGACAGGATCATAGATGTTCGGCGGCTGTTATCGGTTAACTTCGACACCTGCCACGTCACCAATTATTCGCTCTCCCATGAG
     | |   | | |  |||  | ||   | |   ||||| ||| |    ||   ||| ||||||| |  |  || |  |  | ||||||  |       ||||| ||||||||||||||||| ||||||||||| ||||| ||||| || |||      || ||| || ||||||||| |||| | |||||||||
---aatctgcggacatgagttgtggatgattatttgatgtt-attgtatttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccaaaaataaaattatcaaaagtggattttatagagaaaatgtctgaaacagGGCATATCAACGGACAGGATCATAGATGTTCGGCGGCTGTTATCGGTTAACTTCGACACCTGCCACGTCACCAATTATTCGCTCTCCCATGAG
     aaaaataaaattatca  TA-rich tract