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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctaaccatagcaatttcatgttcagtgttttatacaatttcactgaatgtcgtttatttgcagCCACATTGGGTTACAGACGAAGAATTTAGCATGGGCTTCCTTGAACTAAAGGCTCCGCCAGTACATACTCCAAAACATGCTTCTTCCCAGAATGGCTTGT

Basic information

species Arabidopsis thaliana
transcript AT1G24706.1
intron # 29
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 29
lower sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------------------------------------gtgagtgctaaccatagca-atttcatgttcagtgttttatacaatttcactgaatgtcgtttat--ttgcagCCACATTGGGTTACAGACGAAGAATTTAGCATGGGCTTCCTTGAACTAAAGGCTCCGCCAGTACATACTCCAAAACATGCTTCTTCCCAGAATGGCTTGT-
                                                              |     | || || |  | | ||    |  | | ||| ||  | | |     ||  || |  ||  ||||||||    ||||||||||||||||||||| |||||||||  |||||||| ||| || | |||   | | || ||||   |  |   |   |   |||    | 
gtaactttgtttataaacaataatgtgtctaaaaaacctgtatatgttataggaatttttaatataaacaaatcaaattatagtttgcatatattctttcatg-actgtagtaaaacttcctccatacttgcagCCTTCATGGGTTACAGACGAAGAATTTGGCATGGGCTATCTTGAACTGAAGCCTGCACCATCGCTTGCTTCAAAGTCT-TTAGCTGGTAATTTGGTAGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164018702|gb|EL974376.1|EL974376
EST:     GCAACTGGTGTTGGGGCTGCTCTGTCTGCAAGAAAA                         CCACATTGGGTTACAGACGAAGAATTTAGCATGGGCTTCCTTGAACTAAAG
genomic: GCAACTGGTGTTGGGGCTGCTCTGTCTGCAAGAAAAgtgagtgcta ... ttatttgcagCCACATTGGGTTACAGACGAAGAATTTAGCATGGGCTTCCTTGAACTAAAG
EST: gi|164090068|gb|EL972563.1|EL972563
EST:     GCAACTGGTGTTGGGGCTGCTCTGTCTGCAAGAAAA                         CCACATTGGGTTACAGACGAAGTAATTTAGCATGGGCCTTCCTTGAACTAA
genomic: GCAACTGGTGTTGGGGCTGCTCTGTCTGCAAGAAAAgtgagtgcta ... ttatttgcagCCACATTGGGTTACAGACGAAG-AATTTAGCATGGGC-TTCCTTGAACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaatttcatgttcagtgttttatacaatttcactgaatgtcgtttatttgcagCCACATTGGGTTACAGACGAAGAATTTAGCATGGGCTTCCTTGAACTAAAGGCTCCGCCAGTACATACTCCAAAACATGCTTCTTCCCAGAATGGCTTGT
                                            tttattt  CT-rich tract
                 tgttttatacaattt  TA-rich tract