Sequence
atgc intronic sequence ATGC exonic sequencegtatgtacaacctaaattcaatattatcatatcagcatctgtcttatgttttttatcctaagtctttttatcatttggtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC
Basic information
species | Arabidopsis thaliana |
transcript | AT2G13370.1 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 26
gtatgtacaacctaaattcaatattatcatatcagcatctgtcttatgttttttatcctaagtctttttatcatttgg-tgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC
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gtaggtgtatcctc--ttgtataat-ttgtgttattattctgttgactttattgctgctttg-ctaattgtattttgcctgttttcagTTGATGATGCTAGATTGCTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAACTATTAGATTAGATGAAAGACTTGGCCTTACGAAAAAAATTGC
upper sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 26
gtatgtacaacctaaattcaatattatcatatcagcatctgtcttatgttttttatcctaagtctttttatcatttggtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC
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gtaggtgtttcctcttatgtaatttgtgttattattattttgatttaattgctg--ctttgctgattgtatt-tttcttgtttacagTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGC
upper sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 26
---------------------gtatgtacaacctaaattcaatattatcatatcagca----tctgtcttatgttttttatcctaagtctttttatcatt--tggtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC
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gtaagtgttatcatttttctattatatttttcatttctttatttttttgatagaaaggaaattcagttatgtttttctgattgtaatacttttaactattgatattgtcattagTTGACGATGCCAGATTGCTTCTTGGAATACATTATCATGGATTTGGCAATTGGGAAAAGATAAGATTAGATGAAAGGCTGGGTCTCACAAAAAAGATCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164141057|gb|EL968622.1|EL968622EST: TACCTTAAACCTTCAAATTTGGTCCAAGGGTTGCGGTTGGAATCAGA TCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATT
genomic: TACCTTAAACCTTCAAA-TTGGTCCAAGGGTTGCGGTTGGAATCAGAgtatgtacaa ... gtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagcatctgtcttatgttttttatcctaagtctttttatcatttggtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC
tgttctc CT-rich tract
tcttatgttttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtacaacctaaattcaatattatcatatcagcatctgtcttatgttttttatcctaagtctttttatcatttggtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG