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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttttctaaacttattcttcaagggtggatggatttgttcatgttattattaacataacccttgcacagGTCATTGCGCGGAAAAAGATCATGAGGCTCCTCGTGGCCTTCAGCTGATTCTGGGAACCAAAAATAGACCGCATTTGGTTGATACCCTTGTAATGGCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G71220.2
intron # 27
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71220.2 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: GLYMA08G20020.1 (Glycine max), 3'ss of exon 27
----------------------------------------------gttagcttttctaaac--ttattcttcaagggtggat-----ggatttgttcatgttattattaacataacccttgcac-agGTCATTGCGCGGAAAAAGATCATGAGGCTCCTCGTGGCCTTCAGCTGATTCTGGGAACCAAAAATAGACCGCATTTGGTTGATACCCTTGTAATGGCCAA
                                              | || | |    || |  | ||| || ||   |  ||     | ||   ||  |||| || | ||  |    | || |  |||||||||| | || |||||||||||  ||||||| || |||||| ||||||| |||||||||| || ||| ||||| ||||||||| |||| ||||| ||
gtaaaattgcatttttatttaaataaataggctggtgattccttttgataccatcataaagcattaattgttaaataatacattctaagaatccattgttgttcttttcaa--ttgttcatgtattagGTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTCTTGGAACCAAAACTACACCCCATTTAGTTGATACCATTGTGATGGCTAA

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: GLYMA08G13400.1 (Glycine max), 3'ss of exon 30
------------------------gttagcttttctaaactta---ttcttcaagggtggatggatttgttcatgttattattaacataacccttgcacagGTCATTGCGCGGAAAAAGATCATGAGGCTCCTCGTGGCCTTCAGCTGATTCTGGGAACCAAAAATAGACCGCATTTGGTTGATACCCTTGTAATGGCCAA
                        ||   || |||||   | |   |  || | | |   |  |   |  || | || | | |    | |    |   |||||||||   | || |||||||||||  ||||||| || ||||||||||| || || || |||| || ||| ||||| |||||||||||||| |||| |||
tctaattatcatattcctaattctgtcttctcttctatgttaacaatcattaatgagcacagtgtactaatc-tattgtcactcttgtcaaatctaatcagGTCATTTTTCTGAGAAAGATCATGACCCTCCTCGGGGACTTCAGCTGATCCTTGGGACGAAAACTACACCCCATTTAGTTGATACCCTTGTGATGGACAA

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 3'ss of exon 28
----------------gttagcttttctaaacttattcttcaagggtggatggatttgttcatgttattattaacataacccttgcacagGTCATTGCGCGGAAAAAGATCATGAGGCTCCTCGTGGCCTTCAGCTGATTCTGGGAACCAAAAATAGACCGCATTTGGTTGATACCCTTGTAATGGCCAA
                ||    |||  ||   ||     | |   |||  ||   ||||||   |||  ||||||   | | |||  ||||||||||  | ||||||||||||||  ||||| | ||||||||| | ||||| || || |||| || ||| || ||||||||||||||||| ||||||||
gtaaatttgtgtttaggtgcattttgatatttttgcgtgttatcagtgattgttattgttc---ttacaattaact--atcattgatcagGTCATTGTTCAGAAAAAGATCATGATCCTCCTAGAGGCCTTCAGTTAATTCTTGGGACTAAAAGTACACCTCACTTGGTTGATACCCTTGTGATGGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcaagggtggatggatttgttcatgttattattaacataacccttgcacagGTCATTGCGCGGAAAAAGATCATGAGGCTCCTCGTGGCCTTCAGCTGATTCTGGGAACCAAAAATAGACCGCATTTGGTTGATACCCTTGTAATGGCCAA
                                            cccttgc  CT-rich tract
                  atttgttcatgttatt  TA-rich tract