Sequence
atgc intronic sequence ATGC exonic sequencegtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G57110.2 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 3'ss of exon 8
gtatagtaatttactg--aaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcga-gcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
||| | || | | || || ||| ||| | | || | || | ||| | ||| ||| || | | || | | | || || || || | ||| | | ||| | |||| ||||||| ||||||||||||||||| || |||||||||||| ||||| || || || || || || || |||||||||| |||||||||||||| |||
gtaca-tacataattgggaattttgttttgaacaaataaaaggataaacataatggt---tttatttcaatcagatgaag-acaatcgatcatgcatgttgatgcacatttctaatt--ttgatctcttattcctccta---attt--agGCAGACATTGGTCTTGCTATGGGTATCCAAGGAACAGAAGTAGCTAAAGAAAGCTCAGATATAATTATTCTGGATGACAATTTTGCTTCAGTTGTAAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 3'ss of exon 25
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
|| ||| || ||| | | | | | | | || | ||| | | | | ||| | || | | ||| || | |||||||||| ||||| | ||||| || ||||| ||||| || ||||||||||| || || ||||||||||||||||| ||||| || || || | |
---------------------------------------gtttatctctcgactaatgttccatcatgttttgaaagaaaca-atcttcatgttcaacaaccataatccagtctttcttatgcaa----tgctgaacttaat---agGCAGATATAGGTCTCTCCATGGGCATCCAGGGAACTGAAGTTGCCAAGGAGAGTTCTGATATTATCATCTTGGATGACAATTTTGCATCGGTCGTGAGG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GRMZM2G391042_T01 (Zea mays), 3'ss of exon 25
------gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatct--aactgaaagtttcttttggccaa---gtattttg--cctacgtttttactcagcgagcggatcattatctc--attggtgtt--aaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
| | ||| | | ||||| | | | || ||| | | | || || ||||| | | || ||| ||| | | | ||| | || | | |||| || || | | | | ||| | |||||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||| || || || |||||||||||||| ||||| || || || | |
gtttgtggactgtagtctctatgaatttttaattactttgaaaccagcctcgttttggacatgaactttctagttcctaatatgtaatttaaacaagcatctttccatagatgttcaagaaacatcttttgttagtacttgagaaactctgaa---acttgcagGCAGATATTGGTCTATCAATGGGGATTCAGGGAACTGAAGTTGCTAAGGAGAGTTCTGATATTATTATCTTGGATGACAATTTTGCCTCGGTCGTGAGG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GRMZM5G893864_T01 (Zea mays), 3'ss of exon 4
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttct-tttggccaagtattttgc----ctacgtttttactcagcgagcggatcattatctcattggtgttaa-attttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
||| | | | || | | || | | | |||| | | | || | || | || | | || | ||||| | | | || || | | || | || | | ||| ||| || ||| |||||||||||||||||| ||||||| || |||||||||||| || || ||||| || ||||| || || |||||||||| ||| |||| ||||| |||
gtacattcaatt-tgggagttcatattttaaatgaatacaagaat-tcaacatgcatgtgattatatgaagcactatttggtaatacagcacttctaacatgttgaggtttcttccccttctcaatcttatcattattcccacttat---cagGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTAGCCAAAGAGAGCTCAGACATAATAATTCTGGATGACAATTTTTCTTCTGTTGTGAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GRMZM2G138195_T01 (Zea mays), 3'ss of exon 1
------gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaa----agtttcttttggccaagtattttgccta------cgtttttactcagcgagcggatcattatctc--attggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
| | ||| | | ||||| | || | | |||| | |||| || | | || | || | ||| | || | | ||| | || | | |||| || || | | | | | |||||| ||||||||||||| | ||||| || ||||| ||||| |||||||||||||| || || || |||||||||||||| ||||| || || || | |
gtttgtggactgtagtctctatgaattt---ttaattactttgaaaccagcatcggtttggacatgaactttctagttcctaatatgtaatttaaacaagcatctttccatagatgttcaagaaacatcttttgttagtactcgacaaactctgaa-acttgcagACAGATATTGGTCTATCAATGGGGATTCAGGGAACTGAAGTTGCTAAGGAGAGTTCTGATATTATTATCTTGGATGACAATTTTGCCTCGGTCGTGAGG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 27
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtg-ttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
| | || ||| | |||| | || ||| | ||| | | || |||||| | |||| | || ||| | |||||| |||| || ||| |||||||||||||| ||||| || ||| |||||||| ||||| ||||| || || ||||| || ||||||||||| |||||||||||||| |||
------------------------------tctattagaatctattgtt--ctgacacattttttggttcaaattatgtgaactagtttttgttt----------tcatggttgtgtttgtgactctatttttggagttta------gGCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GLYMA13G00420.1 (Glycine max), 3'ss of exon 25
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgc------agGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
||| ||| | | || | || ||||| | ||| | | | | | | || | | |||| | |||| ||| | ||||| |||| |||||||||||||| ||||| || ||| |||||||| ||||| ||||| || || ||||| || ||||||||||| |||||||||||||| |||
-----------------------------------------------ctattagaatctattgttcagacacacatttt---ttggttcaaattaggtaaactagtttttgttttcatggttgt---ttttgtgactctatttttgagtttagGCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GLYMA09G06890.1 (Glycine max), 3'ss of exon 24
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
|||| | ||| || | ||| | | | || | | | | | |||| || ||| | | | | | |||| ||||| |||||||| ||||| || ||| |||||||| || || ||||| || || ||||| || ||||||||||| |||||||||||||| |||
-----------------------------------------------aggtttgaactatcatttcaatgcaggagtttttgttctaatgtagtaaactaactagcttttattctgtttttgtaattctatacattttggaatatagGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GLYMA15G18180.1 (Glycine max), 3'ss of exon 24
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagttt---cttttggccaagtattt-tgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatt---tgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
| || |||| || | | | | || | ||| | | ||| | | |||| || ||| |||| | | | | | | |||| ||||| ||||| || ||||| || ||| |||||||| || || ||||| || || ||||| || ||||||||||| |||||||||||||| |||
----------------------------------------------------taaaggtttgaactatcattccaatgcagatgtttttgttctaatgcagtaaactagcttttattcttttcttgt--aattctatacatttttggaatatagGCCGATATAGGTCTAGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 3'ss of exon 27
gtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
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-----------------------------------------ctcaaataggtttctaatatcttttatataaaaaacatttttttatattttccccgctc-----ttgttcgccttttttttttcttttttttttttggactt-tagGCAGATATTGGTCTTGCAATGGGCATTTCAGGAACAGAGGTTGCAAAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGTCAAG
upper sequence: AT5G57110.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: PP1S8_288V6.1 (Physcomitrella patens), 3'ss of exon 26
gtatagtaatttactgaaatttaaactgataa-tgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
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--------------------gtaaaaggctacctattgatactttctttcaacgg--------ttttggcgtgatgtgtatgtcacagtttaattttctgtcgaggtcacgag---gctgatggtacattattggcac-----tgcagGCCGACATTGGTCTTTCAATGGGTATAGCAGGAACGGAAGTCGCGAAAGAAAGTTCGGACATCATTATCCTCGATGACAATTTCACTTCTGTTGTTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86081055|gb|DR376812.1|DR376812EST: TTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAG GCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAG
genomic: TTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaat ... gtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAGAGTTCGGACATCATCATCTTGGATGACAACTTTGCTTCAGTTGTCAAG
ttaaattttttgagtg TA-rich tract