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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtacgtatacaaaatattcgaccactacttgcatcaatttaatcacttttgagctaacatatattgagattcccaacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCTTTCTCGAAGATGGTTCAAAGTACAGGAACTGCAAACGCGGAGTACTTAC
species | Arabidopsis thaliana |
transcript | AT1G30400.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAA GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCTEST: gi|116442965|gb|EG485557.1|EG485557
genomic: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
EST: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAA GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCTEST: gi|116463094|gb|EG505686.1|EG505686
genomic: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
EST: AAAGTTCTTGTCCTTGATTCTGGAAAA GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCTEST: gi|116481323|gb|EG523915.1|EG523915
genomic: AAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
EST: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAA GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
genomic: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
tgcatcaatttaatcacttttgagctaacatatattgagattcccaacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCTTTCTCGAAGATGGTTCAAAGTACAGGAACTGCAAACGCGGAGTACTTAC
agctaac putative branch site (score: 2)
aatttaatcactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatacaaaatattcgaccactacttgcatcaatttaatcacttttgagctaacatatattgagattcccaacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCTTTCTCGAAGATGGTTCAAAGTACAGGAACTGCAAACGCGGAGTACTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG