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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattgaatattattattctttgacaatcaaagtatagaatcggggttttctttctaacctagttactaatgctgttgttgtttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG

Basic information

species Arabidopsis thaliana
transcript AT1G24706.2
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GLYMA05G34330.1 (Glycine max), 3'ss of exon 25
gtaactattgaatattattattctttgacaatcaaagtatagaatc---ggggttttctttctaacctagttactaatgctgttgttg-tttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG
       |||  | || ||   |||| | |||     | |    |      | |  |  ||      |  | | |  |  |  ||||   |   | | |||| ||||||| | |||||  | ||||||| |||||| ||||||||||| || |||||||| || |||||||| ||||| |||||||| || |||| ||| || ||  
---gtacttgtgtttttttccccttttataattttgatttgattttttaaagataattcttgggggttgttcattttttttaatgttaactgtcatttttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCA

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 22
----------gtaactattgaatattattattctttgacaatcaaagtatagaatc-ggggttttctttctaacctagttactaatgctgttgttgtttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG
           |          ||| ||| |  |||||   |  |||   |   || |||||| |   | |     | |   || ||   || || |   |    |||| ||||||| | |||||  | ||||||| |||||| ||||||||||| || || ||||||||||||||||| || || || ||||| || |||| ||| || ||  
gtacttttgttttttccccttttataattttgatttgatttttgaagataattttcaggggttgttcattttttaaaatgtttactgtcatttttttaattccctttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCA

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 26
lower sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 6
gtaactattgaatattattattctttgacaatcaaagtatagaatcg-gggttttctttctaacctagttactaatgctgttgttgtttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG
||| |||  |||  | || |  |||    |        ||    |   ||||     || |||  ||||| |  ||| ||        |  | | |||  ||||||| | |||||| | |||||||  ||||| || ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||| ||| || ||| 
gtatctaacgaaattaatca--cttgagtagctttttcatttttttttgggtgcagattttaagatagtttc--atgttgactaacacttcattttttcatcagAGTGATGAATCAATATATGAACGGGAGTGTGGGAACATGCCAGGCTTTGCTGTCTATTATAGATATCCTAACAGTCAGCGTGTCACATATGGCCAGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttctttctaacctagttactaatgctgttgttgtttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG
                                     tttctaatcttttctc  CT-rich tract
                                         taatctttt  TA-rich tract