Sequence
atgc intronic sequence ATGC exonic sequence...actccacaactaaatttttttatttccatttatcacaaacatcttcagggttttgatcttatttatttatcgttaattgttgtttcttttttgactccagGATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTTTAGCTGGGAGTTTGGCTCATGTGACTTGCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G02080.2 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G02080.1 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: GLYMA07G14770.1 (Glycine max), 3'ss of exon 27
actccacaactaaatttttttatttccatttatcacaaacatcttcagggttttgatcttatttatttatcgttaattgttgtttcttt--tttgactccagGATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTTTAGCTGGGAGTTTGGCTCATGTGACTTGCAAG
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aaatgactgttgtagtcttgttttaac-tggatgacttcaactggcaaagcttgtacccagtttgttttgc-ttgattttaatttatgtaattaatttgtagGACTATGCCATGGAATCTGATGAGACACGCATATTAAATGCGGCACACTTGATGGTTGCTAGTCTGGCTGGAAGTTTGGCTCATGTTACGTGCAAA
upper sequence: AT1G02080.1 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: EFJ17138 (Selaginella moellendorffii), 3'ss of exon 24
actccacaactaaatttttttatttccatttatcacaaacatcttcagggttttgatcttatttatttatcgttaattgttgtttcttttttgactccagGATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTTTAGCTGGGAGTTTGGCTCATGTGACTTGCAAG
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-----------------------------------------------gtacatccattttacgcgatg--cgcttatataagaccgttcgttg----cagGATTATGCCCTTGAAGCGGACGACAATAGAACGCTTCATTCGTCAAATCTAATGGTTGCGAGTTTGGCGGGAAGTTTGGCTCATGTGACGTGCAAG
upper sequence: AT1G02080.1 (Arabidopsis thaliana), 3'ss of exon 27
lower sequence: EFJ31209 (Selaginella moellendorffii), 3'ss of exon 24
actccacaactaaatttttttatttccatttatcacaaacatcttcagggttttgatcttatttatttatcgttaattgttgtttcttttttgactccagGATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTTTAGCTGGGAGTTTGGCTCATGTGACTTGCAAG
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-----------------------------------------------gtacatccattttacgcgatg--cgcttatataagaccgtccgttg----cagGATTATGCCCTTGAAGCGGACGACAATAGAACGCTTCATTCGTCAAATCTAATGGTTGCGAGTTTGGCGGGAAGTTTGGCTCATGTGACGTGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116440775|gb|EG483367.1|EG483367EST: AGCGAAGTGTTTGTATTGCATGCCAAACAACAAAGGAGCTTGTGCTAAAG GATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTG
genomic: AGCGAAGTGTTTGTATTGCATGCCAAACAACAAAGGAGCTTGTGCTAAAGgttggccaat ... ttgactccagGATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagggttttgatcttatttatttatcgttaattgttgtttcttttttgactccagGATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTTTAGCTGGGAGTTTGGCTCATGTGACTTGCAAG
ttttgac putative branch site (score: 3)
ttgttgtttctttttt CT-rich tract
ttatttatttatcgtt TA-rich tract