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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagaaaacatcttctactctttttgtataagacagtaaatgtctgaaatttagcatataaaaccattggcattccatattacagACCTCTGCAATGAAGAAATTGTCAGCAGATGAGAACCTAAAGAACGAGCATAGTATGAAAAAGCAGGAAACCCGAAACTCGACTATAGTTCTTGAGGACA

Basic information

species Arabidopsis thaliana
transcript AT5G60930.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068212|gb|DR363969.1|DR363969
EST:     GATACATGGAGATCCAGAAAGCAGACCTCGTGCATCAAGTGAAAGCACAG                         ACCTCTGCAATGAAGAAATTGTCAGCAGATGAGAACCTAAAGAACGAGCAT
genomic: GATACATGGAGATCCAGAAAGCAGACCTCGTGCATCAAGTGAAAGCACAGgttagtagaa ... catattacagACCTCTGCAATGAAGAAATTGTCAGCAGATGAGAACCTAAAGAACGAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacagtaaatgtctgaaatttagcatataaaaccattggcattccatattacagACCTCTGCAATGAAGAAATTGTCAGCAGATGAGAACCTAAAGAACGAGCATAGTATGAAAAAGCAGGAAACCCGAAACTCGACTATAGTTCTTGAGGACA
                aaatttagcatataaa  TA-rich tract