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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG

Basic information

species Arabidopsis thaliana
transcript AT5G07180.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: GLYMA20G29010.1 (Glycine max), 3'ss of exon 19
gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
| | | | | | |||| ||| | | ||| | | ||| | | |||| | |||||| | | || ||||| |||||||||||||| |||||||| ||||| || |||||||| |||||| ||| || || ||| |||||||||| ||||| ||
---gtagcactttcttgtgatagtagttctgtttgccttaaatgttttcttatttttgtaatgttgtg-cttgctt---cttttcagGTCCTCCAAAACTGGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATGAGAAGTACTGAGAATCTCAATGAGAAATATATCATAGG

upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: GLYMA10G38730.1 (Glycine max), 3'ss of exon 24
gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
|| | | |||| || | || || | | || || ||| || ||| | ||| || || || ||| | | || || || |||||||||||||| |||||||| ||||| || |||||||| || |||| ||| || || ||| ||||||||| ||||| ||
gtagctcttttctagtg-atagtagtttaaagttttgccttaaatgtttct-----tattttgttatgttgtgtttgcttcttttagGTCCTCCAAAACTAGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATCAGAGGTACTGAGAATCTCAGTGAGAAATATATCATAGG

upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 23
gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
| | | | | |||| | | | | || ||| |||||| | | | | || | | |||| | || ||||| || ||||| |||||||| |||||||||||||| | || |||||||||||| | || ||||| | || || ||||| || ||
-----gtatttacattccttgatgcttcatttataatttattctaattcacttcgagtcctcactttgttttct-------ttccagGTCCTACCAAGCTTGTAATTCTGCACATGGATATGGCTATTCACACCTACGAGGATATCATGAGAATCACTGAAAATTTAAGCGAAAAGTACATTATAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
                                               tccttc  CT-rich tract
 attatgatatatctt  TA-rich tract