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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG

Basic information

species Arabidopsis thaliana
transcript AT5G07180.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: GLYMA20G29010.1 (Glycine max), 3'ss of exon 19
gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
    | |     |  | |   |    |||| |||   | |      |||  |      | ||| | |  ||||  |      ||||||  |  | || ||||| |||||||||||||| |||||||| ||||| || |||||||| ||||||  ||| || || ||| |||||||||| ||||| ||
---gtagcactttcttgtgatagtagttctgtttgccttaaatgttttcttatttttgtaatgttgtg-cttgctt---cttttcagGTCCTCCAAAACTGGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATGAGAAGTACTGAGAATCTCAATGAGAAATATATCATAGG

upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: GLYMA10G38730.1 (Glycine max), 3'ss of exon 24
gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
||     | |  ||||  ||  |   ||    ||    | | ||  ||         ||| || ||| |  ||| ||  || || |||  |  | || || || |||||||||||||| |||||||| ||||| || |||||||| || |||| ||| || || |||  ||||||||| ||||| ||
gtagctcttttctagtg-atagtagtttaaagttttgccttaaatgtttct-----tattttgttatgttgtgtttgcttcttttagGTCCTCCAAAACTAGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATCAGAGGTACTGAGAATCTCAGTGAGAAATATATCATAGG

upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 23
gtcttggtctcatagtttatgatctcttctctttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
     |   | | | |   ||||   |  | | |  || |||   ||||||  |          | | | || |        | ||||  | || ||||| || ||||| |||||||| |||||||||||||| |  || |||||||||||| | || |||||  |    || || ||||| || ||
-----gtatttacattccttgatgcttcatttataatttattctaattcacttcgagtcctcactttgttttct-------ttccagGTCCTACCAAGCTTGTAATTCTGCACATGGATATGGCTATTCACACCTACGAGGATATCATGAGAATCACTGAAAATTTAAGCGAAAAGTACATTATAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgttcattaagattcacaacagcattatgatatatcttgtatggatccttcagGGTCAACGAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGATGAGAAATACATCATTGG
                                               tccttc  CT-rich tract
                         attatgatatatctt  TA-rich tract