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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgatcagtcttttcctgcagtatccctgtacttttacaatcatcttcccttgtaattataaatctgctctttgatttgcagTGCGACGAGTGTTGATGTTGAGGAACAGCTCTATAGAGTTGCACGAGACATGGGAGTCACTTTCATAACCTCATCACAA

Basic information

species Arabidopsis thaliana
transcript AT4G39850.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086145|gb|DR381904.1|DR381904
EST:     CGTTTATTCTTTCACAGGCCGAAGTTTGGAGTCCTTGATGAATGCACAAA                         TGCGACGAGTGTTGATGTTGAGGAACAGCTCTATAGAGTTGCACGAGACAT
genomic: CGTTTATTCTTTCACAGGCCGAAGTTTGGAGTCCTTGATGAATGCACAAAgtaaatgatc ... tgatttgcagTGCGACGAGTGTTGATGTTGAGGAACAGCTCTATAGAGTTGCACGAGACAT
EST: gi|116455501|gb|EG498093.1|EG498093
EST:     CGTTTATTTTTTCACAGGCCGAAGTTTGGAGTCCTTGATGAATGCACAAA                         TGCGACGAGTGTTGATGTTGAGGAACAGCTCTATAGAGTTGCACGAGACAT
genomic: CGTTTATTCTTTCACAGGCCGAAGTTTGGAGTCCTTGATGAATGCACAAAgtaaatgatc ... tgatttgcagTGCGACGAGTGTTGATGTTGAGGAACAGCTCTATAGAGTTGCACGAGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacttttacaatcatcttcccttgtaattataaatctgctctttgatttgcagTGCGACGAGTGTTGATGTTGAGGAACAGCTCTATAGAGTTGCACGAGACATGGGAGTCACTTTCATAACCTCATCACAA
                                          ctttgat  putative branch site (score: 5)
                                    tctgctcttt  CT-rich tract
                       ttgtaattataaatct  TA-rich tract