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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaattttttaacccctttctcctgatacaacataaaacatcaatagacattggataataatgacactttgctgtgtaatcctaactttttccttctgttgttgcagCATGTTAGGCGTGCAGCTGTCTCAGCTCTGAGTACTTTTGCTCATTATAAACCAAACCTTATTAAAGGACTTCTCCCTGAGTTGTTACCACTTCTTTATG

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.2 (Arabidopsis thaliana), 3'ss of exon 24
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 25
---------------------------------------------------------gtaagtgaaattttttaacccctt-tctcctgatacaacataaaacatcaatagacattggataataatgacactttgctgtgtaatc--ctaactttttccttctgttgttgcagCATGTTAGGCGTGCAGCTGTCTCAGCTCTGAGTACTTTTGCTCATTATAAACCAAACCTTATTAAAGGACTTCTCCCTGAGTTGTTACCACTTCTTTATG
                                                         | || |  |    ||||   | || | |||   |    |   | |  |   ||||   |  ||  || | |    |||| |  | ||    ||   |  |     || | ||||||||||||||||||||||||||||  ||  | |||||    || ||  |||| || || || ||||| || ||||| || || || || || ||||||||||
gtaaataccaaaagttctaatgctctgaaaaggaaaaatgtattttaaaaccatttcggaattttagaggtttacttcattgtttccctctttttctgtatatgttggtaga---ttaatggtagtaattggttgccgatttattagttattctgattgccatggttttgcagCATGTTAGGCGTGCAGCTGTCTTGGCCTTAAGTACAGCAGCCCACAATAAGCCCAATCTCATTAAGGGGCTTCTTCCAGAATTATTGCCTCTTCTTTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataataatgacactttgctgtgtaatcctaactttttccttctgttgttgcagCATGTTAGGCGTGCAGCTGTCTCAGCTCTGAGTACTTTTGCTCATTATAAACCAAACCTTATTAAAGGACTTCTCCCTGAGTTGTTACCACTTCTTTATG
                           tcctaac  putative branch site (score: 1)
                           tcctaactttttcctt  CT-rich tract
                              taacttttt  TA-rich tract