Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttatcaatccttcctagattatttaagcaattcggagaggatatcattgtgtttctctaacgtagatcagttcatgcacgacagAGATTAGACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTTTGTGTGATATTGGAAATTTCGTTATTAGGCGTGTCTACCGCATCAAGGA

Basic information

species Arabidopsis thaliana
transcript AT5G47820.2
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124904612|gb|EH978692.1|EH978692
EST:     GAAAGGATCATACAAGTGGGTGCAG                         AGATTAGACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTT
genomic: GAAAGGATCATACAAGTGGGTGCAGgtaatttatc ... tgcacgacagAGATTAGACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTT
EST: gi|86067821|gb|DR363578.1|DR363578
EST:     TGCCTGTGAGTATGAGACTTTTATGGAAAGGATCATACAAGTGGGTGCAG                         AGATTAAACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTT
genomic: TGCCTGTGAGTATGAGACTTTTATGGAAAGGATCATACAAGTGGGTGCAGgtaatttatc ... tgcacgacagAGATTAGACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTT
EST: gi|86087960|gb|DR383719.1|DR383719
EST:     TGCCTGTGAGTATGAGACTTTTATGGAAAGGATCATACAAGTGGGTGCAG                         AGATTAAACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTT
genomic: TGCCTGTGAGTATGAGACTTTTATGGAAAGGATCATACAAGTGGGTGCAGgtaatttatc ... tgcacgacagAGATTAGACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcggagaggatatcattgtgtttctctaacgtagatcagttcatgcacgacagAGATTAGACTTGCTGCCGTGTTTCATTTGGGAGGAAAAGTCTTTAAGGTTTTGTGTGATATTGGAAATTTCGTTATTAGGCGTGTCTACCGCATCAAGGA
                         ctctaac  putative branch site (score: 2)
           atatcatt  TA-rich tract